LAB BIO
At CICEKLAB, we design and develop machine learning algorithms for the bioinformatics pipeline to improve our understanding of genetic diseases and disorders.
We work on the main tracks below:
(i) learning to improve the quality of raw sequencing data as well as variant calls,
(ii) ensuring this data is shared in a privacy preserving way among life scientists,
(iii) predicting risk genes for neuropsychiatric disorders such as autism spectrum disorder,
(iv) analyzing and understanding tumor metabolism for surgical applications,
(v) drug effect and side-effect prediction,
(vi) discovering disease risk conferring genetic variant combinations.
We are a part of Bilkent University, Computer Engineering Department in Ankara, Turkey.
Latest News
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UCLA CGSI 2024
Ercument Cicek and our graduate student Mehmet Alper Yılmaz attended UCLA - Computational Genomics …
New graduates from the lab
We have two new MS graduates from the lab. Gün Kaynar coauthored 3 papers in Bioinformatics (x2) an…
Ercument Cicek joins the Editorial Board of IEEE/ACM TCBB Journal as an Associate Editor
Ercument Cicek joined the Editorial Board of the IEEE/ACM Transactions in Computational Biolog…
We are coorganizing RECOMB-PRIEQ 2024
We are co-organizing a satellite event on biomedical data privacy and equity as a part of the RECOM…
CICEKLAB at RECOMB 2023
We co-organized RECOMB 2023 and RECOMB-Seq 2023 which took place in Istanbul between April 13 and 1…
We are organizing RECOMB 2023 and RECOMB-Seq 2023
Ercument is the publicity chair of RECOMB 2023 and the program co-chair of RECOMB-Seq 2023 Workshop…
We competed in the ICPC World Finals Moscow
We represented Bilkent University Computer Engineering Department and Turkey in the ICPC World Fina…
Best Paper Award - RECOMB 2021
Our paper "Robust Inference of Kinase Activity using Functional Networks" is awarded the Best …
Three new MS graduates from CICEKLAB
CICEKLAB has three new MS graduates. Kerem Ayoz, Doruk Cakmakci and Furkan Ozden have successfully&…
Three accepted highlight talks in ISMB/ECCB 2021.
CICEKLAB has three highlight talks accepted for presentation at ISMB/ECCB 2021, 2 in MLCSB track an…
Two upcoming invited talks
Ercument will give two invited talks in June 2021.First talk, "Machine learning models to predict d…
New paper in PETS
Our paper Genome Reconstruction Attacks Against Genomic Data-Sharing Beacons is accepted …
We are organizing GenoPri 2021
This year we are co-organizing Genome and Privacy Workshop (GenoPri) 2021 with Gerstein Lab at Yale…
We are organizing HIBIT 2021
This year we are organizing HIBIT 2021 symposium which will bring together 3 keynotes and 8 invited…
A. Ercüment Çiçek received Aziz Sancar Incentive Award
Ercüment Çiçek has been awarded an Aziz Sancar Incentive Award by the Health Institutes of Turkey (…
Talk at GenoPri'20
Kerem Ayoz presented our work on the protective effect of participant kinship against attacks on ge…
Talk at ECCB 2020
Kerem Ayoz gave a talk about our work on the protective effect of participant kinship against attac…
Paper in PLoS Computational Biology
Our paper on assessing tumor margins during surgery with a machine learning based techniques is acc…
Presentation at RECOMB 2020
I gave a talk at RECOM 2020 Virtual Conference new Epistasis Test Prioritization Algorithm we propo…