A. Ercüment Çiçek

Welcome! 

I am Ercument Cicek,

o   an Associate Professor at the Computer Engineering Department of Bilkent University, and
      o   an associate editor of IEEE/ACM Transactions in Computational Biology and Bioinformatics
Before,

Education

Ph.D. in Computer Science

Thesis: Metabolic network-based Analyses of Omics Data Advisor: Prof. Gultekin Ozsoyoglu

Visiting Graduate Student

Worked in Iossifov Lab.

M.Sc. Computer Science and Engineering

Thesis: Ensuring Location Diversity in Privacy Preserving Spatio-Temporal Data Mining

B.Sc. in Computer Science and Engineering

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Awards

Success Award 2025
Success Award 2025 Turkish Intelligence Foundation
Akıngüç Award 2025
Akıngüç Award 2025
Distinguished Teaching Award 2022
Distinguished Teaching Award 2022 Bilkent University
Aziz Sancar Incentive Award 2020
Aziz Sancar Incentive Award 2020 Health Institutes of Turkey - TÜSEB
BAGEP 2020
BAGEP 2020 Young Scientist Awards Program
Research Incentive Award
Research Incentive Award 2019 - IEEE Turkey Section
Research Incentive Award
Research Incentive Award 2018 - METU Parlar Foundation
Visiting Researcher Fellowship
Visiting Researcher Fellowship Visiting University of Strasbourg in Summer 2018
Outstanding Young Scientist Award
Outstanding Young Scientist Award 2017 - Turkish Academy of Sciences
Lane Fellowship
Lane Fellowship 2013 - 2015
ACM SIGMOD Scholarship
ACM SIGMOD Scholarship ACM A.M. Turing Centenary Celebration
Choose Ohio First Scholarship
Choose Ohio First Scholarship 2011-2012
Fulbright Doctorate Fellowship
Fulbright Doctorate Fellowship 2009

Talks

  • UCLA Computational Genomics Summer Institute 2024, Los Angeles, LA. June 15, 2024
  • Physics of Life Seminar Series, EPFL, Lausanne, Switzerland. Feb 24, 2023.
  • SAFARI Seminar Series, ETH, Zurich, Switzerland, Jun 2, 2023
  • Lausanne CompBio Meetings, Lausanne, Switzerland, Jun 14, 2023
  • Special Seminar, Carnegie Mellon University, Pittsburgh PA, Jun 20, 2023
  • Keynote Talk, East European Bioinformatics and Computational Genomics School (EEBG) 2023, Chișinău, Moldova, June 29, 2023.
  • Science Academy - Artificial Intelligence Summer School 2021, Sabanci University, Istanbul, Turkey. June 23, 2021.
  • RECOMB 2023, Istanbul, Turkey. April 17, 2023.
  • EuroCC Turkey Seminars, Sabancı University, Istanbul, Turkey. June 9, 2022.
  • Science Academy - Artificial Intelligence Summer School 2022, Özyeğin University, Istanbul, Turkey. June 28, 2022.
  • International Basic Oncology Congress, Istanbul, Turkey. June 4, 2022.
  • 13th International Symposium on Pharmaceutical Sciences (IPOPS) 2021, Ankara University, Ankara, Turkey.June 22, 2021.
  • Mt. Sinai, Icahn School of Medicine, New York City, NY. Apr 12, 2019.
  • Jackson Laboratory, Farmington, CT. Apr 10, 2019.
  • Bilkent University, Department of Neuroscience, Ankara, Turkey. Mar 27, 2019.
  • Hacettepe University, Computer Engineering Dept., Ankara, Türkiye, Nov 2, 2018.
  • Weill Cornell Medical College, Institute for Computational Biomedicine, New York City, NY. Apr 11, 2018.
  • New York University, Department of Biology, New York City, NY. Apr 12, 2018.
  • HIBIT 2019, Izmir, Turkey. Oct 18, 2019.
  • IEEE AP/MTT/EMC/ED Seminar, Electrical Engineering Dept., Middle East Technical University, Ankara, Turkey. Oct 11, 2019.
  • Sabanci University, Artificial Intelligence Summer School, Istanbul, Turkey, Sep 7, 2019.
  • Bioinformatics Workshop III, Gazi University, Ankara, Turkey, May 26, 2019.
  • ISCB-RSG Webinar, May 23, 2019.
  • Acibadem University - Medical Informatics Course, Istanbul, Turkey, May 2, 2019.
  • AGU, Life Sciences Congress, Kayseri, Turkey, Feb 22, 2019.
  • National Nanotechnology Research Center (UNAM) - Synthetic Biology Day '18, Bilkent University, Ankara, Turkey, Oct 6, 2018.
  • ISMB 2018, Chicago, IL. Jul 8, 2018.
  • Yale University, Biomedical Informatics Dept., New Haven, CT. Apr 9, 2019.
  • Koc University, Istanbul, Türkiye, Mar 4, 2019
  • Sabanci University, Istanbul, Türkiye, Nov 14, 2018.
  • Middle East Technical University, Informatics Institute, Ankara, Turkey. Nov 8, 2017.
  • Bilkent University, Dept. of Electric and Electronics Engineering, Ankara, Turkey. Nov 1, 2017.
  • GenoPri 2017, Orlando, FL. Oct 15, 2017.
  • Istanbul University, IUGEN, Istanbul, Turkey. Mar 3, 2019.
  • BYOYO 2018, Bogazici University, Istanbul, Jul 4, 2018.
  • Cukurova University, Adana, Turkey. Sep 23, 2017.
  • The International Symposium on Health Informatics and Bioinformatics (HIBIT) 2017, North Cyprus, Jun 28, 2017
  • 12th National Medical Genetics Congress, Izmir, Turkey, Oct 07, 2016.
  • University of Edinburgh, Edinburgh, Scotland, UK. Aug 19, 2015.
  • Bilkent University, Dept. of Psychology, Ankara, Turkey. Nov 25, 2015.
  • Bilkent University, Dept. of Molecular Biology and Genetics, Ankara, Turkey. Dec 9, 2015.
  • Middle East Technical University, Informatics Institute, Ankara, Turkey. Mar 9, 2016.
  • Middle East Technical University, Biological Sciences Department, Ankara, Turkey. Mar 11, 2016.
  • International Meeting for Autism Research (IMFAR), Salt Lake City, UT. May 15, 2015.
  • Ozyegin University, Istanbul, Turkey. Dec 22, 2014.
  • Koc University, Istanbul, Turkey. Dec 23, 2014.
  • Sabanci University, Istanbul, Turkey. Dec 24, 2014.
  • Bilkent University, Ankara, Turkey. Dec 29, 2014.
  • Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA. January 9, 2014.
  • ISMB 2014, Boston, MA. July 15, 2014.
  • International Biomedicine and Genome Institute, Dokuz Eylul University, Izmir, Turkey. July 25, 2014.
  • University of Strasbourg, France. Mar 12, 2015.
  • The Center for Computational Biology and Bioinformatics (C2B2), Columbia University, New York, NY. Mar 13, 2013.
  • Lane Center for Computational Biology, Carrnegie Mellon University, Pittsburgh, PA. March 18, 2013.
  • Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH. March 21, 2013.
  • Gerstein Lab, Yale University, New Haven, CT. March 26, 2013.
  • Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA. March 27, 2013.
  • Dept. of Genome Sciences, University of Washington, Seattle, WA. April 23, 2013.
  • Sabanci University, Istanbul, Turkey. Jun 6, 2012
  • EECS - Case Western Reserve University, @EECS Departmental Seminars, Nov. 29, 2010.
  • School of Medicine - Case Western Reserve University, to Cystic Fibrosis Research Group, Nov. 2, 2010.
  • University of Texas at Dallas (UTD), Texas, USA, Aug. 22, 2008.

Teaching