Hercules: a profile HMM-based hybrid error correction algorithm for long reads
ISMB 2018, Chicago, IL, Jul 8, 2018.

Re-identification of individuals in genomic data-sharing beacons via allele inference
ISMB 2018, Chicago, IL, Jul 7, 2018.

Makina Ogrenmesi ile Sinirsel Gelisim Hastaliklari Icin Gen Kesfi
BYOYO 2018, Bogazici University, Istanbul, Jul 4, 2018.

Spatio-Temporal Gene Discovery for Autism Spectrum Disorder

  • Weill Cornell Medical College, Institute for Computational Biomedicine, New York City, NY. Apr 11, 2018.
  • New York University, Department of Biology, New York City, NY. Apr 12, 2018.

Inference Attacks Against Genomic Data-Sharing Beacons

  • Middle East Technical University, Informatics Institute, Ankara, Turkey. Nov 8, 2017.
  • Bilkent University, Dept. of Electric and Electronics Engineering, Ankara, Turkey. Nov 1, 2017.
  • GenoPri 2017, Orlando, FL. Oct 15, 2017.

Bioinformatics for Variant Interpretation
Cukurova University, Adana, Turkey. Sep 23, 2017.

Genomic Data Sharing and Privacy Risks
The International Symposium on Health Informatics and Bioinformatics (HIBIT) 2017, North Cyprus, Jun 28, 2017

Gene Discovery for Autism Spectrum Disorder: Relating Genotype with Phenotype
12th National Medical Genetics Congress, Izmir, Turkey, Oct 07, 2016.

Network-based Analyses of Neurodevelopmental Disorders

  • University of Edinburgh, Edinburgh, Scotland, UK. Aug 19, 2015.
  • Bilkent University, Dept. of Psychology, Ankara, Turkey. Nov 25, 2015.
  • Bilkent University, Dept. of Molecular Biology and Genetics, Ankara, Turkey. Dec 9, 2015.
  • Middle East Technical University, Informatics Institute, Ankara, Turkey. Mar 9, 2016.
  • Middle East Technical University, Biological Sciences Department, Ankara, Turkey. Mar 11, 2016.

Gene Expression, Regulatory Elements and Rare Sequence Variation Identify Genes and Subnetworks Underlying Autism Risk
International Meeting for Autism Research (IMFAR), Salt Lake City, UT. May 15, 2015.

Knowledge Discovery on OMICS Data Using Biochemical Networks

  • Ozyegin University, Istanbul, Turkey. Dec 22, 2014.
  • Koc University, Istanbul, Turkey. Dec 23, 2014.
  • Sabanci University, Istanbul, Turkey. Dec 24, 2014.
  • Bilkent University, Ankara, Turkey. Dec 29, 2014.

MIRA: Mutual Information-based Reporter Algorithm for Metabolic Networks

  • Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA. January 9, 2014.
  • ISMB 2014, Boston, MA. July 15, 2014.
  • International Biomedicine and Genome Institute, Dokuz Eylul University, Izmir, Turkey. July 25, 2014.

ADEMA: An Algorithm to Determine Expected Metabolite Level Alterations Using Mutual Information

  • University of Strasbourg, France. Mar 12, 2015.
  • The Center for Computational Biology and Bioinformatics (C2B2), Columbia University, New York, NY. Mar 13, 2013.
  • Lane Center for Computational Biology, Carrnegie Mellon University, Pittsburgh, PA. March 18, 2013.
  • Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH. March 21, 2013.
  • Gerstein Lab, Yale University, New Haven, CT. March 26, 2013.
  • Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA. March 27, 2013.
  • Dept. of Genome Sciences, University of Washington, Seattle, WA. April 23, 2013.

Computational Techniques and Systems For Metabolomics Analysis
Sabanci University, Istanbul, Turkey. Jun 6, 2012

Analyzing the Dynamics of Metabolic Networks: Computer Science Approach
EECS - Case Western Reserve University, @EECS Departmental Seminars, Nov. 29, 2010.

Computational Analysis of Metabolomics Data + Querying and Visualization Environment
School of Medicine - Case Western Reserve University, to Cystic Fibrosis Research Group, Nov. 2, 2010.

Operational Variable Job Scheduling with Eligibility Constraints
University of Texas at Dallas (UTD), Texas, USA, Aug. 22, 2008.